Adapter trimming: Why are adapter sequences trimmed from only the 3' ends of reads - Illumina Knowledge
First steps with NGS data
Contamination-controlled high-throughput whole genome sequencing for influenza A viruses using the MiSeq sequencer | Scientific Reports
A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform | Microbiome | Full Text
User guide — cutadapt 1.7.1 documentation
![SECAPR—a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments [PeerJ]](https://dfzljdn9uc3pi.cloudfront.net/2018/5175/1/fig-1-full.png "SECAPR—a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments [PeerJ]")
SECAPR—a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments [PeerJ]
First steps with NGS data
de novo assembly of Illumina reads using Velvet (Galaxy) - Bioinformatics Documentation
Illumina adapter sequences - gogosalo
A single test approach for accurate and sensitive detection and taxonomic characterization of Trypanosomes by comprehensive anal
SoftBerry - adapter trim
How to Map and clean up short read sequence data efficiently - Legacy GATK Forum
Which Trimmomatic adapter file cuts the "Illumina Universal Adapter"?
SARS-CoV-2 Genome Assembly and Annotation Service | BV-BRC
de novo assembly of Illumina reads using Velvet (Galaxy) - Bioinformatics Documentation
Issues with SARS-CoV-2 sequencing data - nCoV-2019 Genomic Epidemiology - Virological
The Basic Alignment Workflow - Core NGS Tools - UT Austin Wikis
Biomolecules | Free Full-Text | High-Throughput Identification of Adapters in Single-Read Sequencing Data
SPARTA workflow diagram. Single-end Illumina FASTQ files, a FASTA... | Download Scientific Diagram
Trimming Illumina universal adapters using cutadapt proving insufficient
Read QC and trimming
BecA Bioinformatics
UCD Bioinformatics Core RNA-Seq Workshop
